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Nature Biotechnology

Resumen/Descripción – provisto por la editorial en inglés
Nature Biotechnology is a monthly journal covering the science and business of biotechnology. It publishes new concepts in technology/methodology of relevance to the biological, biomedical, agricultural and environmental sciences as well as covers the commercial, political, ethical, legal, and societal aspects of this research. The first function is fulfilled by the peer-reviewed research section, the second by the expository efforts in the front of the journal. We provide researchers with news about business; we provide the business community with news about research developments.
Palabras clave – provistas por la editorial

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Disponibilidad
Institución detectada Período Navegá Descargá Solicitá
No detectada desde jul. 2012 / hasta dic. 2023 Nature.com

Información

Tipo de recurso:

revistas

ISSN impreso

1087-0156

ISSN electrónico

1546-1696

Editor responsable

Springer Nature

País de edición

Reino Unido

Fecha de publicación

Tabla de contenidos

Genetic medicines aim straight for the heart

Cormac Sheridan

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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Data sharing in the age of deep learning

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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Exploring tRNAs and their modifications and crosstalk using Nano-tRNAseq

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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Xenotransplantation: how close are we?

Kathryn Aschheim; Laura DeFrancesco

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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Quantitative analysis of tRNA abundance and modifications by nanopore RNA sequencing

Morghan C. LucasORCID; Leszek P. Pryszcz; Rebeca Medina; Ivan Milenkovic; Noelia Camacho; Virginie MarchandORCID; Yuri Motorin; Lluís Ribas de Pouplana; Eva Maria NovoaORCID

<jats:title>Abstract</jats:title><jats:p>Transfer RNAs (tRNAs) play a central role in protein translation. Studying them has been difficult in part because a simple method to simultaneously quantify their abundance and chemical modifications is lacking. Here we introduce Nano-tRNAseq, a nanopore-based approach to sequence native tRNA populations that provides quantitative estimates of both tRNA abundances and modification dynamics in a single experiment. We show that default nanopore sequencing settings discard the vast majority of tRNA reads, leading to poor sequencing yields and biased representations of tRNA abundances based on their transcript length. Re-processing of raw nanopore current intensity signals leads to a 12-fold increase in the number of recovered tRNA reads and enables recapitulation of accurate tRNA abundances. We then apply Nano-tRNAseq to <jats:italic>Saccharomyces cerevisiae</jats:italic> tRNA populations, revealing crosstalks and interdependencies between different tRNA modification types within the same molecule and changes in tRNA populations in response to oxidative stress.</jats:p>

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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DisP-seq reveals the genome-wide functional organization of DNA-associated disordered proteins

Yu-Hang XingORCID; Rui Dong; Lukuo Lee; Shruthi Rengarajan; Nicolò Riggi; Gaylor Boulay; Miguel N. RiveraORCID

<jats:title>Abstract</jats:title><jats:p>Intrinsically disordered regions (IDRs) in DNA-associated proteins are known to influence gene regulation, but their distribution and cooperative functions in genome-wide regulatory programs remain poorly understood. Here we describe DisP-seq (disordered protein precipitation followed by DNA sequencing), an antibody-independent chemical precipitation assay that can simultaneously map endogenous DNA-associated disordered proteins genome-wide through a combination of biotinylated isoxazole precipitation and next-generation sequencing. DisP-seq profiles are composed of thousands of peaks that are associated with diverse chromatin states, are enriched for disordered transcription factors (TFs) and are often arranged in large lineage-specific clusters with high local concentrations of disordered proteins and different combinations of histone modifications linked to regulatory potential. We use DisP-seq to analyze cancer cells and reveal how disordered protein-associated islands enable IDR-dependent mechanisms that control the binding and function of disordered TFs, including oncogene-dependent sequestration of TFs through long-range interactions and the reactivation of differentiation pathways upon loss of oncogenic stimuli in Ewing sarcoma.</jats:p>

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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The scverse project provides a computational ecosystem for single-cell omics data analysis

Isaac VirshupORCID; Danila BredikhinORCID; Lukas Heumos; Giovanni PallaORCID; Gregor SturmORCID; Adam GayosoORCID; Ilia KatsORCID; Mikaela KoutrouliORCID; Philipp Angerer; Volker Bergen; Pierre Boyeau; Maren Büttner; Gokcen Eraslan; David FischerORCID; Max Frank; Justin HongORCID; Michal Klein; Marius LangeORCID; Romain LopezORCID; Mohammad LotfollahiORCID; Malte D. Luecken; Fidel Ramirez; Jeffrey RegierORCID; Sergei Rybakov; Anna C. Schaar; Valeh Valiollah Pour AmiriORCID; Philipp WeilerORCID; Galen Xing; Bonnie Berger; Dana Pe’erORCID; Aviv RegevORCID; Sarah A. TeichmannORCID; Francesca FinotelloORCID; F. Alexander WolfORCID; Nir YosefORCID; Oliver Stegle; Fabian J. TheisORCID;

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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Challenges and solutions to advancing heath equity with medical devices

Kushal T. Kadakia; Vinay K. RathiORCID; Reshma Ramachandran; James L. Johnston; Joseph S. RossORCID; Sanket S. DhruvaORCID

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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RIP-PEN-seq identifies a class of kink-turn RNAs as splicing regulators

Bin LiORCID; Shurong Liu; Wujian Zheng; Anrui Liu; Peng Yu; Di Wu; Jie Zhou; Ping Zhang; Chang Liu; Qiao Lin; Jiayi Ye; Simeng He; Qiaojuan Huang; Hui Zhou; Jianjun ChenORCID; Lianghu QuORCID; Jianhua YangORCID

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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A microneedle vaccine printer for thermostable COVID-19 mRNA vaccines

Aurélien vander StraetenORCID; Morteza Sarmadi; John L. DaristotleORCID; Maria KanelliORCID; Lisa H. TostanoskiORCID; Joe Collins; Apurva Pardeshi; Jooli Han; Dhruv Varshney; Behnaz Eshaghi; Johnny Garcia; Timothy A. Forster; Gary Li; Nandita Menon; Sydney L. Pyon; Linzixuan ZhangORCID; Catherine Jacob-DolanORCID; Olivia C. Powers; Kevin Hall; Shahad K. Alsaiari; Morris WolfORCID; Mark W. TibbittORCID; Robert FarraORCID; Dan H. BarouchORCID; Robert LangerORCID; Ana JaklenecORCID

Palabras clave: Biomedical Engineering; Molecular Medicine; Applied Microbiology and Biotechnology; Bioengineering; Biotechnology.

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