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Parallel Computing Technologies: 9th International Conference, PaCT 2007, Pereslavl-Zalessky, Russia, September 3-7, 2007. Proceedings

Victor Malyshkin (eds.)

En conferencia: 9º International Conference on Parallel Computing Technologies (PaCT) . Pereslavl-Zalessky, Russia . September 3, 2007 - September 7, 2007

Resumen/Descripción – provisto por la editorial

No disponible.

Palabras clave – provistas por la editorial

Programming Techniques; Computer System Implementation; Software Engineering/Programming and Operating Systems; Computer Systems Organization and Communication Networks; Computation by Abstract Devices; Algorithm Analysis and Problem Complexity

Disponibilidad
Institución detectada Año de publicación Navegá Descargá Solicitá
No detectada 2007 SpringerLink

Información

Tipo de recurso:

libros

ISBN impreso

978-3-540-73939-5

ISBN electrónico

978-3-540-73940-1

Editor responsable

Springer Nature

País de edición

Reino Unido

Fecha de publicación

Información sobre derechos de publicación

© Springer-Verlag Berlin Heidelberg 2007

Tabla de contenidos

Orthogonal Organized Finite State Machine Application to Sensor Acquired Information

Brian J. d’Auriol; John Kim; Sungyoung Lee; Young-Koo Lee

The application of the Orthogonal Organized Finite State Machine (OOFSM) to the representation of data acquired by sensor networks is proposed. The OOFSM was proposed in earlier work; it is succinctly reviewed here. The approach and representation of the OOFSM to sensor acquired data is formalized. The usefulness of this OOFSM application is illustrated by several case studies, specifically, gradients, contouring and discrete trajectory path determination. In addition, this paper informally discusses the OOFSM as a Cellular Automata.

- Applications | Pp. 111-118

Parallel Broadband Finite Element Time Domain Algorithm Implemented to Dispersive Electromagnetic Problem

Boguslaw Butrylo

The numerical analysis of some broadband electromagnetic fields and frequency-dependent materials using a time domain method is the main subject of this paper. The spatial and time-dependent distribution of the electromagnetic field is approximated by the finite element method. The parallel form of the algorithm valid for some linear materials, and the formulation of the FE code for a dispersive electromagnetic problem are presented and compared. The complex forms of these algorithms have an effect on the memory and computational costs of the distributed formulation. The properties of the algorithm are estimated using high performance cluster of workstations.

- Applications | Pp. 119-127

Strategies for Development of a Parallel Program for Protoplanetary Disc Simulation

Sergei Kireev; Elvira Kuksheva; Aleksey Snytnikov; Nikolay Snytnikov; Vitaly Vshivkov

Protoplanetary disc simulation must be done first, with high precision, and second, with high speed. Some strategies to reach these goals are presented in the paper. They include: the reduction of the 3D protoplanetary disc model to quasi-3D, the use of fundamental Poisson equation solution, the simulation in the natural (cylindrical) coordinate system and computation domain decomposition. The domain decomposition strategy is shown to reach the simulation goals the best.

- Applications | Pp. 128-139

Generation of SMACA and Its Application in Web Services

Anirban Kundu; Ruma Dutta; Debajyoti Mukhopadhyay

Web Search Engine uses forward indexing and inverted indexing as a part of its functional design. This indexing mechanism helps retrieving data from the database based on user query. In this paper, an efficient solution to handle the indexing problem is proposed with the introduction of Nonlinear Single Cycle Multiple Attractor Cellular Automata (SMACA). This work simultaneously shows generation of SMACA by using specific rule sequence. Searching mechanism is done with linear time complexity.

- Applications | Pp. 140-152

Enhancing Fault-Tolerance of Large-Scale MPI Scientific Applications

G. Rodríguez; P. González; M. J. Martín; J. Touriño

The running times of large-scale computational science and engineering parallel applications, executed on clusters or Grid platforms, are usually longer than the mean-time-between-failures (MTBF). Therefore, hardware failures must be tolerated to ensure that not all computation done is lost on machine failures. Checkpointing and rollback recovery are very useful techniques to implement fault-tolerant applications. Although extensive research has been carried out in this field, there are few available tools to help parallel programmers to enhance their applications with fault tolerance support. This work presents an experience to endow with fault tolerance two large MPI scientific applications: an air quality simulation model and a crack growth analysis. A fault tolerant solution has been implemented by means of a checkpointing and recovery tool, the CPPC framework. Detailed experimental results are presented to show the practical usefulness and low overhead of this checkpointing approach.

- Applications | Pp. 153-161

Study of 3D Dynamics of Gravitating Systems Using Supercomputers: Methods and Applications

Nikolay Snytnikov; Vitaly Vshivkov; Valery Snytnikov

We describe parallel numerical code for solving problems of stellar dynamics. The code is based on numerical solving of Poisson and Vlasov equations in cylindrical coordinates using particle-in-cells method. The code is designed for use on supercomputers with distributed memory. We consider different possible strategies of parallelization according to initial technical parameters of numerical methods and physical conditions of the model. We present results of numerical simulations for the following problems of stellar dynamics: investigation of influence of central potential on the vertical motions of thin gravitating disk; stability of uniform sphere with anisotropic distribution of velocity; numerical approximation of equilibrium states of gravitating systems.

- Applications | Pp. 162-173

Transient Mechanical Wave Propagation in Semi-infinite Porous Media Using a Finite Element Approach with Domain Decomposition Technology

Andrey Terekhov; Arnaud Mesgouez; Gaelle Lefeuve-Mesgouez

In this paper, the authors propose a numerical investigation in the time domain of the mechanical wave propagation due to an impulsional load on a semi-infinite soil. The ground is modelled as a porous saturated viscoelastic medium involving the complete Biot theory. An accurate and efficient Finite Element Method using a matrix-free technique is used. Two parallel algorithms are used: Geometrical Domain Decomposition (GDD) and Algebraic Decomposition (AD). Numerical results show that GDD algorithm has the best time. Physical numerical results present the displacements of the fluid and solid particles over the surface and in depth.

- Applications | Pp. 174-183

The Location of the Gene Regions Under Selective Pressure: Plato Algorithm Parallelization

Yuri Vyatkin; Konstantin Gunbin; Alexey Snytnikov; Dmitry Afonnikov

The number of sequenced genes is dramatically increasing with that of international genomic projects. The gene sequence information proved to be helpful in predictions of protein structure, protein function and mutations targeted at improving the biological and biotechnological properties of proteins. Processing of the immense information stored in the databases demands high-throughput computational approaches. Here, we performed a parallelization of the algorithm for analysis of nucleotide substitutions in gene sequences from different organisms previously implemented in the PLATO program. The results demonstrated that the parallelization of the algorithm provides linear speedup of the PLATO program.

- Applications | Pp. 184-187

Object Serialization and Remote Exception Pattern for Distributed C++/MPI Application

Karol Bańczyk; Tomasz Boiński; Henryk Krawczyk

MPI is commonly used standard in development of scientific applications. It focuses on interlanguage operability and is not very well object oriented. The paper proposes a general pattern enabling design of distributed and object oriented applications. It also presents its sample implementations and performance tests.

- Techniques for Parallel Programming Supporting | Pp. 188-193

Improving Job Scheduling Performance with Dynamic Replication Strategy in Data Grids

Nguyen Dang Nhan; Soon Wook Hwang; Sang Boem Lim

Dealing with a large amount of data in Data Grids makes the requirement for efficient data access more critical. In this paper, we proposed a new approach to replication problem by organizing the data into several data categories that it belongs to. This organizing will help improving placement strategy of data replication. We studied our approach in combination with scheduling issue and evaluating it through simulation. The result shows that our strategy has improved the scheduling performance by 30%.

- Techniques for Parallel Programming Supporting | Pp. 194-199