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Life in Extreme Environments

Ricardo Amils ; Cynan Ellis-Evans ; Helmut Hinghofer-Szalkay (eds.)

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Institución detectada Año de publicación Navegá Descargá Solicitá
No detectada 2007 SpringerLink

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Tipo de recurso:

libros

ISBN impreso

978-1-4020-6284-1

ISBN electrónico

978-1-4020-6285-8

Editor responsable

Springer Nature

País de edición

Reino Unido

Fecha de publicación

Información sobre derechos de publicación

© Springer Science+Business Media B.V. 2007

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Tabla de contenidos

Access to glacial and subglacial environments in the Solar System by melting probe technology

Stephan Ulamec; Jens Biele; Oliver Funke; Marc Engelhardt

A key aspect for understanding the biological and biochemical environment of subglacial waters, on Earth or other planets and moons in the Solar system, is the analysis of material embedded in or underneath icy layers on the surface. In particular the Antarctic lakes (most prominently Lake Vostok) but also the icy crust of Jupiter’s moon Europa or the polar caps of Mars require such investigation. One possible technique to penetrate thick ice layers with small and reliable probes is by melting, which does not require the heavy, complex and expensive equipment of a drilling rig. While melting probes have successfully been used for terrestrial applications e.g. in Antarctic ice, their performance in vacuum is different and theory needs confirmation by tests. Thus, a vacuum chamber has been used to perform a series of melting tests in cold (liquid nitrogen cooled) water ice samples. The feasibility of the method was demonstrated and the energy demand for a space mission could be estimated. Due to the high energy demand in case of extraterrestrial application (e.g. Europa or polar caps of Mars), only heating with radioactive isotopes seems feasible for reaching greater depths. The necessary power is driven by the desired penetration velocity (approximately linearly) and the dimensions of the probe (proportional to the cross section). In comparison to traditional drilling techniques the application of a melting probe for exploration of Antarctic lakes offers the advantage that biological contamination is minimized, since the Probe can be sterilized and the melting channel freezes immediately after the probe’s passage, inhibiting exchange with the surface layers and the atmosphere. In order to understand the physical and chemical nature of the ice layers, as well as for analysing the underlying water body, a melting probe needs to be equipped with a suite of scientific instruments that are capable of e.g. determining the chemical and isotopic composition of the embedded or dissolved materials.

Pp. 1-24

Exploration of Ellsworth Subglacial Lake: a concept paper on the development, organisation and execution of an experiment to explore, measure and sample the environment of a West Antarctic subglacial lake

M. J. Siegert; A. Behar; M. Bentley; D. Blake; S. Bowden; P. Christoffersen; C. Cockell; H. Corr; D. C. Cullen; H. Edwards; A. Ellery; C. Ellis-Evans; G. Griffiths; R. Hindmarsh; D. A. Hodgson; E. King; H. Lamb; L. Lane; K. Makinson; M. Mowlem; J. Parnell; D. A. Pearce; J. Priscu; A. Rivera; M. A. Sephton; M. R. Sims; A . M. Smith; M. Tranter; J. L. Wadham; G. Wilson; J. Woodward

Antarctic subglacial lakes have, over the past few years, been hypothesised to house unique forms of life and hold detailed sedimentary records of past climate change. Testing this hypothesis requires in situ examinations. The direct measurement of subglacial lakes has been considered ever since the largest and best-known lake, named Lake Vostok, was identified as having a deep water-column. The Subglacial Antarctic Lake Environments (SALE) programme, set up by the Scientific Committee on Antarctic Research (SCAR) to oversee subglacial lakes research, state that prior exploration of smaller lakes would be a “prudent way forward”. Over 145 subglacial lakes are known to exist in Antarctica, but one lake in West Antarctica, officially named Ellsworth Subglacial Lake (referred to hereafter as Lake Ellsworth), stands out as a candidate for early exploration. A consortium of over 20 scientists from seven countries and 14 institutions has been assembled to plan the exploration of Lake Ellsworth. An eight-year programme is envisaged: 3 years for a geophysical survey, 2 years for equipment development and testing, 1 year for field planning and operation, and 2 years for sample analysis and data interpretation. The science experiment is simple in concept but complex in execution. Lake Ellsworth will be accessed using hot water drilling. Once lake access is achieved, a probe will be lowered down the borehole and into the lake. The probe will contain a series of instruments to measure biological, chemical and physical characteristics of the lake water and sediments, and will utilise a tether to the ice surface through which power, communication and data will be transmitted. The probe will pass through the water column to the lake floor. The probe will then be pulled up and out of the lake, measuring its environment continually as this is done. Once at the ice surface, any water samples collected will be taken from the probe for laboratory analysis (to take place over subsequent years). The duration of the science mission, from deployment of the probe to its retrieval, is likely to take between 24 and 36 h. Measurements to be taken by the probe will provide data about the following: depth, pressure, conductivity and temperature; pH levels; biomolecules (using life marker chips); anions (using a chemical analyzer); visualisation of the environment (using cameras and light sources); dissolved gases (using chromatography); and morphology of the lake floor and sediment structures (using sonar). After the probe has been retrieved, a sediment corer may be dropped into the lake to recover material from the lake floor. Finally, if time permits, a thermistor string may be left in the lake water to take time-dependent measurements of the lake’s water column over subsequent years. Given that the comprehensive geophysical survey of the lake will take place in two seasons during 2007–2009, a two-year instrument and logistic development phase from 2008 (after the lake’s bathymetry has been assessed) makes it possible that the exploration of Lake Ellsworth could take place at the beginning of the next decade.

Pp. 25-43

Thermostable proteins as probe for the design of advanced fluorescence biosensors

Marcella de Champdoré; Maria Staiano; Vincenzo Aurilia; Olesia V. Stepanenko; Antonietta Parracino; Mosè Rossi; Sabato D’Auria

In this review we explore the advantages deriving from the use of either enzymes or sugar binding proteins isolated from thermophilic organisms to develop stable fluorescence biosensors. We report on a novel approach to address the consumption of the analyte by enzyme-based biosensors, namely the utilization of apo-enzymes as non-active forms of proteins which are still able to bind the ligand but cannot transform it into product. We also report recent studies in which the fluorescence labeling of a naturally thermostable binding protein allows a quantitative determination of glucose.

Pp. 45-54

Astrobiological significance of minerals on Mars surface environment

Jesus Martinez-Frias; Gabriel Amaral; Luis Vázquez

Despite the large amount of geomorphological, geodynamic and geophysical data obtained from Mars missions, much is still unknown about Martian mineralogy and paragenetic assemblages, which is fundamental to an understanding of its entire geological history. Minerals are not only indicators of the physical–chemical settings of the different environments and their later changes, but also they could (and do) play a crucial astrobiological role related with the possibility of existence of extinct or extant Martian life. This paper aims: (1) to present a synoptic review of the main water-related Martian minerals (mainly jarosite and other sulfates) discovered up to the present time; (2) to emphasize their significance as environmental geomarkers, on the basis of their geological settings and mineral parageneses on earth (in particular in the context of some selected terrestrial analogues), and (3) to show that their differential UV shielding properties, against the hostile environmental conditions of the Martian surface, are of a great importance for the search for extraterrestrial life.

Pp. 55-67

Industrial barrens: extreme habitats created by non-ferrous metallurgy

M. V. Kozlov; E. L. Zvereva

Industrial barrens are bleak open landscapes evolved due to deposition of airborne pollutants, with only small patches of vegetation surrounded by bare land. These extreme environments appeared as a by-product of human activities about a century ago. The comparative analysis of information available from 36 industrial barrens worldwide allowed to identify factors and conditions that are necessary and sufficient for the appearance of these specific habitats. Vast majority of industrial barrens is associated with non-ferrous smelters, located predominantly in mountainous or hilly landscapes. Development of industrial barrens starts from gradual decline of vegetation due to severe pollution impact accompanied by other human-induced disturbances (primarily clearcutting) and is usually concluded by a fire, facilitated by accumulation of woody debris. Since vegetation recovery is hampered by soil toxicity caused by extreme contamination by heavy metals, soils remain bare and suffer from erosion enhanced by altered microclimate. In spite of general reduction in biodiversity, industrial barrens still support a variety of life, including regionally rare and endangered species, as well as populations that evolved specific adaptations to the harsh and toxic environment. Recently, most industrial barrens show some signs of natural recovery due to emission decline or closure of responsible polluters; some of barren sites have been or are being successfully revegetated. The remaining industrial barrens offer unique opportunities for conducting ‘basic’ ecological research, in particular for testing some general theories in an evolutionary novel stressful environment; some of barren habitats deserve conservation for scientific and educational purposes.

Pp. 69-97

Viruses in extreme environments

Marc Le Romancer; Mélusine Gaillard; Claire Geslin; Daniel Prieur

The tolerance limits of extremophiles in term of temperature, pH, salinity, desiccation, hydrostatic pressure, radiation, anaerobiosis far exceed what can support non-extremophilic organisms. Like all other organisms, extremophiles serve as hosts for viral replication. Many lines of evidence suggest that viruses could no more be regarded as simple infectious “fragments of life” but on the contrary as one of the major components of the biosphere. The exploration of niches with seemingly harsh life conditions as hypersaline and soda lakes, Sahara desert, polar environments or hot acid springs and deep sea hydrothermal vents, permitted to track successfully the presence of viruses. Substantial populations of double-stranded DNA virus that can reach 10 particles per milliliter were recorded. All these viral communities, with genome size ranging from 14 kb to 80 kb, seem to be genetically distinct, suggesting specific niche adaptation. Nevertheless, at this stage of the knowledge, very little is known of their origin, activity, or importance to the in situ microbial dynamics. The continuous attempts to isolate and to study viruses that thrive in extreme environments will be needed to address such questions. However, this topic appears to open a new window on an unexplored part of the viral world.

Pp. 99-113

Microbial ecology of submerged marine caves and holes characterized by high levels of hydrogen sulphide

Francesco Canganella; Giovanna Bianconi; Chiaki Kato; Juan Gonzalez

Submarine caves, cavities and niches characterised by HS elevated concentrations are particularly interesting for their inhabiting microflora as well as for the overall chemical, geological and biological parameters. These ecosystems are usually populated by well adapted living forms, physically distributed following the in situ concentration and gradient of micronutrients, O and HS, and also according to the values of temperature and pH. The biota is primarily characterised by prokaryotes (both autotrophic and heterotrophic) adapted to anoxic and/or microaerophilic condition and capable to form extensive biofilms on the rocky surfaces and even on the bottom sediment. These habitats can be defined as extreme, because the scarcity or absence of solar irradiation, the chemo-physical traits and the fact that specialised prokaryotes are often the only inhabitants. This review is focused on the microbial ecology of marine caves and holes characterised by high levels of hydrogen sulphide. Ecological and geological data are already available but very few insights as far as regard microbiology were achieved in order to describe these fascinating habitats. The autochthonous mesophilic and thermotolerant microorganisms living in these caves may have interesting physiological traits and eventually may lead to potential application in biotechnological processes.

Pp. 115-124

Extremely halophilic archaea and the issue of long-term microbial survival

Sergiu Fendrihan; Andrea Legat; Marion Pfaffenhuemer; Claudia Gruber; Gerhard Weidler; Friedrich Gerbl; Helga Stan-Lotter

Halophilic archaebacteria (haloarchaea) thrive in environments with salt concentrations approaching saturation, such as natural brines, the Dead Sea, alkaline salt lakes and marine solar salterns; they have also been isolated from rock salt of great geological age (195–250 million years). An overview of their taxonomy, including novel isolates from rock salt, is presented here; in addition, some of their unique characteristics and physiological adaptations to environments of low water activity are reviewed. The issue of extreme long-term microbial survival is considered and its implications for the search for extraterrestrial life. The development of detection methods for subterranean haloarchaea, which might also be applicable to samples from future missions to space, is presented.

Pp. 125-140

Planktonic microbial assemblages and the potential effects of metazooplankton predation on the food web of lakes from the maritime Antarctica and sub-Antarctic islands

Antonio Camacho

Antarctica is the continent with the harshest climate on the Earth. Antarctic lakes, however, usually presents liquid water, at least during part of the year or below the ice cover, especially those from the sub-Antarctic islands and the maritime Antarctic region where climatic conditions are less extreme. Planktonic communities in these lakes are mostly dominated by microorganisms, including bacteria and phototrophic and heterotrophic protists, and by metazooplankton, usually represented by rotifers and calanoid copepods, the latter mainly from the genus . Here I report and discuss on studies performed during the last decade that show that there is a potential for top–down control of the structure of the planktonic microbial food web in sub-Antarctic and maritime Antarctic lakes. In some of the studied lakes, the effect of copepod grazing on protozoa, either ciliates or flagellates, depending on size of both the predator and the prey, could promote cascade effects that would be transmitted to the bacterioplankton assemblage.

Pp. 141-159

Fungi in Antarctica

Serena Ruisi; Donatella Barreca; Laura Selbmann; Laura Zucconi; Silvano Onofri

Fungi are generally easily dispersed and are able to colonize a very wide variety of different substrata and to withstand many different environmental conditions. Because of these characteristics they spread all over the world. The Antarctic mycoflora is quite diversified within the different climatic regions of the continent. Most Antarctic microfungi are cosmopolitan; some of them are propagules transported to Antarctica but unable to grow under the Antarctic conditions, while others, termed indigenous, are well adapted and able to grow and reproduce even at low temperatures, mostly as psychrotolerant, or fast sporulating forms, able to conclude their life-cycles in very short time. In the most extreme and isolated areas of the continent, such as the Antarctic Dry Valleys, endemic species showing physiological and morphological adaptations have locally evolved. Most Antarctic fungi, as well as fungi from other dry and cold habitats, are adapted to low temperatures, repeated freeze and thawing cycles, low water availability, osmotic stress, desiccation, low nutrients availability and high UV radiation. Sometimes single strategies are not specific for single stress factors and allow these microorganisms to cope with more than one unfavourable condition.

Pp. 161-175